Schema for chainOrnAna1Link

Schema for chainOrnAna1Link

Database: bosTau4 Primary Table: chainOrnAna1Link Row Count: 28,918,799
Format description: alignment block in chain

field	example	SQL type	description
`bin`	585	`smallint unsigned`	Indexing field to speed chromosome range queries.
`tName`	chr1	`varchar(255)`	Target sequence name
`tStart`	12635	`int unsigned`	Alignment start position in target
`tEnd`	12657	`int unsigned`	Alignment end position in target
`qStart`	3934855	`int unsigned`	start in query
`chainId`	281499	`int unsigned`	chain id in chain table

Connected Tables and Joining Fields


	bosTau4.chainOrnAna1.id (via chainOrnAna1Link.chainId) bosTau4.netOrnAna1.chainId (via chainOrnAna1Link.chainId)

Sample Rows

bin	tName	tStart	tEnd	qStart	chainId
585	chr1	12635	12657	3934855	281499
585	chr1	12659	12711	3934877	281499
585	chr1	12711	12753	3934934	281499
585	chr1	12753	12824	3934977	281499
585	chr1	12825	12847	3935048	281499
585	chr1	12847	12919	3935071	281499
585	chr1	12919	12971	3935149	281499
585	chr1	12971	13002	3935202	281499
585	chr1	13016	13097	3935233	281499
585	chr1	13097	13119	3935315	281499

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.