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  Schema for mrnaOrientInfo
  Database: bosTau4    Primary Table: mrnaOrientInfo    Row Count: 29,034
Format description: Extra information on ESTs - calculated by polyInfo program
fieldexampleSQL type info description
bin 76smallint unsigned range Indexing field to speed chromosome range queries.
chrom chr7varchar(255) values Reference sequence chromosome or scaffold
chromStart 3343206int unsigned range Start position in chromosome
chromEnd 3409052int unsigned range End position in chromosome
name BC149093varchar(255) values Accession of EST
intronOrientation 4smallint range Orientation of introns with respect to EST
sizePolyA 25smallint range Number of trailing A's
revSizePolyA 0smallint range Number of trailing A's on reverse strand
signalPos 0smallint range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint range PolyA signal position on reverse strand if any

  Connected Tables and Joining Fields
        bosTau4.all_mrna.qName (via mrnaOrientInfo.name)
      bosTau4.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      bosTau4.gbSeq.acc (via mrnaOrientInfo.name)
      bosTau4.gbStatus.acc (via mrnaOrientInfo.name)
      bosTau4.imageClone.acc (via mrnaOrientInfo.name)
      bosTau4.mgcFullMrna.qName (via mrnaOrientInfo.name)
      bosTau4.mgcGenes.name (via mrnaOrientInfo.name)
      bosTau4.refFlat.name (via mrnaOrientInfo.name)
      bosTau4.refGene.name (via mrnaOrientInfo.name)
      bosTau4.refLink.mrnaAcc (via mrnaOrientInfo.name)
      bosTau4.refSeqAli.qName (via mrnaOrientInfo.name)
      bosTau4.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      bosTau4.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)

  Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
76chr733432063409052BC149093425000
587chr1327895339076BT030515300240
905chr294203368442048604BC1346871139000
113chr294205817842076697BC10550710250480
590chr1720698728057M18753600230
933chr294569293245701575BC1335941016000
590chr1720722727895AB09908060000
590chr1725479728053AB098834-310023
882chr283895931838969940BC118188626000
592chr19884511021220BT021662100000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.