This track shows alignments of cow mRNAs from the
Mammalian Gene Collection
(MGC) having full-length open reading frames (ORFs) to the genome.
The goal of the Mammalian Gene Collection is to provide researchers with
unrestricted access to sequence-validated full-length protein-coding cDNA
clones for human, mouse, and rat genes.
An optional codon coloring feature is available for quick
validation and comparison of gene predictions.
To display codon colors, select the genomic codons option from the
Color track by codons pull-down menu. Click
here for more
information about this feature.
GenBank cow MGC mRNAs identified as having full-length ORFs
were aligned against the genome using blat. When a single mRNA
aligned in multiple places, the alignment having the highest base identity was
found. Only alignments having a base identity level within 1% of
the best and at least 95% base identity with the genomic sequence