Publication

Hisato Kobayashi, Takayuki Sakurai, Misaki Imai, Nozomi Takahashi, Atsushi Fukuda, Yayoi Obata, Shun Sato, Kazuhiko Nakabayashi, Kenichiro Hata, Yusuke Sotomaru, Yutaka Suzuki, Tomohiro Kono. (2012) Contribution of Intragenic DNA Methylation in Mouse Gametic DNA Methylomes to Establish Oocyte-Specific Heritable Marks PLoS Genetics 8(1),e1002440 doi:10.1371/journal.pgen.1002440 ; [PubMed] [PLoS GENETICS]

Methylation level per CpG position
GV oocyte (wild-type)      Methylome_GV-oocyte_Wild.zip (90.1 MB)
 WIG
GV oocyte (Dmnt3L-deficient)      Methylome_GV-oocyte_Dnmt3L.zip (87.1 MB)
 WIG
Sperm      Methylome_Sperm.zip (85.9 MB)
 WIG
ESC      Methylome_ESC.zip (108 MB)
 WIG
Blastocyst      Methylome_Blastocyst.zip (91.4 MB)
 WIG

 Column A: Chromosome number
 Column B: Genome position (mm9)
 Column C: The number of aligned cytosines
 Column D: The number of aligned thymines
 Column E: Methylation level (%)

 WIG: wiggle format file

Hisato Kobayashi, Takayuki Sakurai, Fumihito Miura, Misaki Imai, Kentaro Mochiduki, Eikichi Yanagisawa, Akihiko Sakashita, Takuya Wakai, Yutaka Suzuki, Takashi Ito, Yasuhisa Matsui, Tomohiro Kono. (2013) High-resolution DNA methylome analysis of primordial germ cells identifies gender-specific reprogramming in mice. Genome Research. doi: 10.1101/gr.148023.112 ; [PubMed] [Genome Research]

Methylation level per CpG position
E10.5 male PGC      Methylome_105mPGC_120615.zip (105 MB)
 WIG
E10.5 female PGC      Methylome_105fPGC_120615.zip (104 MB)
 WIG
E13.5 male PGC      Methylome_135mPGC_120618.zip (96.3 MB)
 WIG
E13.5 female PGC      Methylome_135fPGC_120613.zip (95.7 MB)
 WIG
E16.5 male PGC      Methylome_165mPGC_120612.zip (114 MB)
 WIG
E16.5 female PGC      Methylome_165fPGC_120613.zip (94.7 MB)
 WIG

 Column A: Chromosome number
 Column B: Genome position (mm9)
 Column C: The number of aligned cytosines
 Column D: The number of aligned thymines
 Column E: Methylation level (%)

 WIG: wiggle format file

Cite us

Please contact us (tomohiro [at mark] nodai.ac.jp or nodaigc [at mark] nodai.ac.jp) when you use any information in this site. If you use any data in this site in your recent work that will be published in a journal or on the website, please cite our publications. In addition to the relevant paper, please include a reference to our website in your manuscript [http://www.nodai-genome.org/mouse_en.html].


Contact information

E-mail : tomohiro [at mark] nodai.ac.jp
                nodaigc [at mark] nodai.ac.jp